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I make use of the advanced search feature in Zotereo frequently, which enables searching through manuscript PDFs. However, when you obtain manuscript PDF files from online databases, they may not be in a searchable format.

Download software Download the linux software version. Run the following command: sudo tar -C /usr/local -xzvf /mnt/c/Users/*[your_username]*/Downloads/freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz You will also need to install some dependancies: sudo apt-get install tcsh sudo apt-get install libglu1 sudo apt-get install libxss1 Post-Install Configurations Add Freesurfer to your path:

Download your own icon image Find path to the executable of your application by running (replace brackets with name of applicaion): which [name_application] Copy the path from this output.

Get the latest ANTs code Download the latest code into an arbitrary directory, I use ~/code: mkdir ~/code cd ~/code git clone https://github.com/ANTsX/ANTs.git You will also need to install the ZLIB libraries:

Setup fuse Run the following in a terminal: modprobe fuse Create a FUSE usergroup and add yourself to the group sudo groupadd fuse sudo usermod -a -G fuse $USER Create a set of ssh-keys, press enter when asked to name the file (blank) and press enter when asked to enter a passphrase (blank):

Download NiftyReg Obtain the newest version of NiftyReg or by running the following: mkdir -p ~/code/niftyreg_source cd ~/code/niftyreg_source git clone https://github.com/SuperElastix/niftyreg.git Run CMake/Make Make the build and install directories.

Installing on Pop_OS! You will first need to run the following steps prior to installing FSL. The following steps were originally written here here . Make sure you run a backup prior to performing this hack… just in case.

Install Remote Desktop Extension 1. Navigate to Chrome Remote Desktop Web Store and install it by clicking Add to Chrome. 2. Click Launch App and the remote desktop app window should open.

One frequently asked question amoung graduate students is “How do you organize/read manuscripts?”. I have found a workflow that works quite well and allows me to stay ontop of the endless amount of new publications.

While working with Git is most often performed at the command line, it can often be daughnting for people who are not as comfortable with a terminal window. GitHub has made the entry point easier by introducing a user interface application - GitHub Desktop.